feat[lsp,org,cite]: Added better citation icons

I added some snazzy icons to citar.
Corrected several org-latex classes to avoid hyperlink highlights.
Added (potentially) better LSP settings with syntax flags

config.el

@@ -15,10 +15,6 @@
 (setq fancy-splash-image (concat doom-private-dir "emacs.png"))
 
 (map! :desc "Switch to normal mode" :i "C-c" #'evil-normal-state)
-(use-package! noCtrlC
-  :after org-mode)
-
-(setq org-pretty-entities 0)
 
 (defun bash ()
   (interactive)
@@ -579,8 +575,6 @@ If nil it defaults to `split-string-default-separators', normally
   (citar-file-note-extensions '(".org"))
   (org-cite-global-bibliography '("~/org/references.bib"))
 
-
-
   (org-cite-csl-styles-dir
    (expand-file-name "~/Zotero/styles/"))
   (org-cite-export-processors
@@ -589,15 +583,61 @@ If nil it defaults to `split-string-default-separators', normally
   :hook
   (LaTeX-mode . citar-capf-setup)
   (org-mode . citar-capf-setup))
-(after! org-mode
-  (org-cite-global-bibliography '("~/org/references.bib"))
-  )
-
 (citar-org-roam-mode)
 
+(after! citar
+    (setq citar-indicator-files-icons
+      (citar-indicator-create
+       :symbol (nerd-icons-faicon
+                "nf-fa-file_o"
+                :face 'nerd-icons-green
+                :v-adjust -0.1)
+       :function #'citar-has-files
+       :padding "  " ; need this because the default padding is too low for these icons
+       :tag "has:files"))
+
+    (setq citar-indicator-links-icons
+      (citar-indicator-create
+       :symbol (nerd-icons-faicon
+                "nf-fa-link"
+                :face 'nerd-icons-orange
+                :v-adjust 0.01)
+       :function #'citar-has-links
+       :padding "  "
+       :tag "has:links"))
+
+    (setq citar-indicator-notes-icons
+      (citar-indicator-create
+       :symbol (nerd-icons-codicon
+                "nf-cod-note"
+                :face 'nerd-icons-blue
+                :v-adjust -0.3)
+       :function #'citar-has-notes
+       :padding "    "
+       :tag "has:notes"))
+
+    (setq citar-indicator-cited-icons
+      (citar-indicator-create
+       :symbol (nerd-icons-faicon
+                "nf-fa-circle_o"
+                :face 'nerd-icon-green)
+       :function #'citar-is-cited
+       :padding "  "
+       :tag "is:cited"))
+
+(setq citar-indicators
+  (list citar-indicator-files-icons
+        citar-indicator-links-icons
+        citar-indicator-notes-icons
+        citar-indicator-cited-icons)))
+
 (add-to-list 'org-latex-classes
     '("student-apa7"
-      "\\documentclass[stu]{apa7}"
+      "\\documentclass[stu]{apa7}
+\\hypersetup{hidelinks}
+\\usepackage{times}
+[NO-DEFAULT-PACKAGES]
+[NO-PACKAGES]"
      ("\\section{%s}" . "\\section*{%s}")
      ("\\subsection{%s}" . "\\subsection*{%s}")
      ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
@@ -618,7 +658,9 @@ If nil it defaults to `split-string-default-separators', normally
 
 (add-to-list 'org-latex-classes
     '("student-mla"
-      "\\documentclass[stu]{mla}"
+      "\\documentclass[stu]{mla}
+\\hypersetup{hidelinks}
+\\usepackage{times} "
      ("\\section{%s}" . "\\section*{%s}")
      ("\\subsection{%s}" . "\\subsection*{%s}")
      ("\\subsubsection{%s}" . "\\subsubsection*{%s}")

config.org

@@ -45,13 +45,8 @@ Set a sweet splash image
 I want a non-ESC way to get back to normal mode:
 #+BEGIN_SRC emacs-lisp
 (map! :desc "Switch to normal mode" :i "C-c" #'evil-normal-state)
-(use-package! noCtrlC
-  :after org-mode)
 #+END_SRC
 
-#+BEGIN_SRC emacs-lisp
-    (setq org-pretty-entities 0)
-#+END_SRC
 * Terminal setup
 I like to just use bash:
 #+BEGIN_SRC emacs-lisp
@@ -785,8 +780,11 @@ We'll want a handy shortcut for this.
 : /home/user/.config/doom/
 
 ** Automatic Citations with *citar* and *org-cite*
-Citar is a sweet little package for managing citations. Right here we'll set it up
+Citar is a sweet little package for managing citations.
-We want a general bibliography file, a styles directory, and a default set of styles.
+We want a general [[file:~/org/references.bib][bibliography file]], a [[file:~/Zotero/styles/][styles directory]],
+and a default set of styles.
+*** Citar setup
+First of all, we must configure citar.
 #+BEGIN_SRC emacs-lisp
 (use-package! citar
   :ensure t
@@ -796,8 +794,6 @@ We want a general bibliography file, a styles directory, and a default set of st
   (citar-file-note-extensions '(".org"))
   (org-cite-global-bibliography '("~/org/references.bib"))
 
-
-
   (org-cite-csl-styles-dir
    (expand-file-name "~/Zotero/styles/"))
   (org-cite-export-processors
@@ -806,20 +802,70 @@ We want a general bibliography file, a styles directory, and a default set of st
   :hook
   (LaTeX-mode . citar-capf-setup)
   (org-mode . citar-capf-setup))
-(after! org-mode
-  (org-cite-global-bibliography '("~/org/references.bib"))
-  )
-
 (citar-org-roam-mode)
 #+END_SRC
 
+*** Icons for some prettification
+#+BEGIN_SRC emacs-lisp
+(after! citar
+    (setq citar-indicator-files-icons
+      (citar-indicator-create
+       :symbol (nerd-icons-faicon
+                "nf-fa-file_o"
+                :face 'nerd-icons-green
+                :v-adjust -0.1)
+       :function #'citar-has-files
+       :padding "  " ; need this because the default padding is too low for these icons
+       :tag "has:files"))
+
+    (setq citar-indicator-links-icons
+      (citar-indicator-create
+       :symbol (nerd-icons-faicon
+                "nf-fa-link"
+                :face 'nerd-icons-orange
+                :v-adjust 0.01)
+       :function #'citar-has-links
+       :padding "  "
+       :tag "has:links"))
+
+    (setq citar-indicator-notes-icons
+      (citar-indicator-create
+       :symbol (nerd-icons-codicon
+                "nf-cod-note"
+                :face 'nerd-icons-blue
+                :v-adjust -0.3)
+       :function #'citar-has-notes
+       :padding "    "
+       :tag "has:notes"))
+
+    (setq citar-indicator-cited-icons
+      (citar-indicator-create
+       :symbol (nerd-icons-faicon
+                "nf-fa-circle_o"
+                :face 'nerd-icon-green)
+       :function #'citar-is-cited
+       :padding "  "
+       :tag "is:cited"))
+
+(setq citar-indicators
+  (list citar-indicator-files-icons
+        citar-indicator-links-icons
+        citar-indicator-notes-icons
+        citar-indicator-cited-icons)))
+#+END_SRC
+
+
 ** Scholarly Writing Environment with Org-mode
 I like to keep formatting simple.
 Let's use a package or two to set a decent document class:
 #+BEGIN_SRC emacs-lisp
 (add-to-list 'org-latex-classes
     '("student-apa7"
-      "\\documentclass[stu]{apa7}"
+      "\\documentclass[stu]{apa7}
+\\hypersetup{hidelinks}
+\\usepackage{times}
+[NO-DEFAULT-PACKAGES]
+[NO-PACKAGES]"
      ("\\section{%s}" . "\\section*{%s}")
      ("\\subsection{%s}" . "\\subsection*{%s}")
      ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
@@ -840,7 +886,9 @@ Let's use a package or two to set a decent document class:
 
 (add-to-list 'org-latex-classes
     '("student-mla"
-      "\\documentclass[stu]{mla}"
+      "\\documentclass[stu]{mla}
+\\hypersetup{hidelinks}
+\\usepackage{times} "
      ("\\section{%s}" . "\\section*{%s}")
      ("\\subsection{%s}" . "\\subsection*{%s}")
      ("\\subsubsection{%s}" . "\\subsubsection*{%s}")

init.el

@@ -80,13 +80,13 @@
        ;;vterm             ; the best terminal emulation in Emacs
 
        :checkers
-       syntax              ; tasing you for every semicolon you forget
+       (syntax +flymake +childframe)              ; tasing you for every semicolon you forget
        (spell +flyspell +everywhere) ; tasing you for misspelling mispelling
        grammar           ; tasing grammar mistake every you make
 
        :tools
        ;;ansible
-       biblio            ; Writes a PhD for you (citation needed)
+       (biblio +icons)            ; Writes a PhD for you (citation needed)
        ;;debugger          ; FIXME stepping through code, to help you add bugs
        ;;direnv
        ;;docker
@@ -153,7 +153,7 @@
        ;;nim               ; python + lisp at the speed of c
        ;;nix               ; I hereby declare "nix geht mehr!"
        ;;ocaml             ; an objective camel
-       (org +roam2 +gnuplot +hugo +pomodoro +noter)               ; organize your plain life in plain text
+       (org +roam2 +gnuplot +hugo +pomodoro +noter +present +pretty)               ; organize your plain life in plain text
        ;;php               ; perl's insecure younger brother
        ;;plantuml          ; diagrams for confusing people more
        ;;purescript        ; javascript, but functional